Publications


At CMU

2025
  • CRISPR-based neuromorphic computing for solving regression and classification — bioRxiv PDF DOI
  • Sequestration-based Protein Neural Networks Tolerate the Effects of Shared Translational Resources — bioRxiv PDF DOI
  • Design principles of neuromorphic computing using genetic circuits — bioRxiv PDF DOI
  • Engineering cell fate with adaptive feedback control — ACS Synthetic Biology PDF DOI
  • Pattern recognition in living cells through the lens of machine learning — Open Biology PDF DOI
  • Sequestration-based neural networks that operate out of equilibrium — bioRxiv PDF DOI

Before CMU

2024
  • Design of a biomolecular adaptive controller to restore sustained periodic behavior — bioRxiv PDF DOI
  • Phage anti-CRISPR control by an RNA-and DNA-binding helix–turn–helix protein — Nature DOI
  • Ten Years of the Synthetic Biology Summer Course at Cold Spring Harbor Laboratory — ACS Synthetic Biology PDF DOI
  • Engineering sequestration-based biomolecular classifiers with shared resources — ACS Synthetic Biology PDF DOI
  • Design of a sequestration-based network with tunable pulsing dynamics — IEEE CDC DOI
  • Neural networks built from enzymatic reactions can operate as linear and nonlinear classifiers — IEEE CDC PDF DOI
2023
  • Building subtraction operators and controllers via molecular sequestration — IEEE CSL PDF DOI
  • A portable regulatory RNA array design enables tunable and complex regulation across diverse bacteria — Nature Communications PDF DOI
2021
  • Ultrasensitive molecular controllers for quasi-integral feedback — Cell Systems PDF DOI
2020
  • Sequestration and delays enable the synthesis of a molecular derivative operator — IEEE CDC DOI
2019
  • Practical differentiation using ultrasensitive molecular circuits — ECC DOI
  • A universal method for sensitive and cell-free detection of CRISPR-associated nucleases — Chemical Science PDF DOI
2018
  • Dynamic control of aptamer–ligand activity using strand displacement reactions — ACS Synthetic Biology DOI
  • Homogeneous time constants promote oscillations in negative feedback loops — ACS Synthetic Biology DOI
  • A robust molecular network motif for period-doubling devices — ACS Synthetic Biology DOI
2017
  • An ultrasensitive biomolecular network for robust feedback control — IFAC World Congress PDF DOI
  • Aggregates of Monotonic Step Response systems: A Structural Classification — IEEE T-CNS DOI
  • Design of a bistable network using the CRISPR/Cas system — IEEE CCTA DOI
  • Design of Robust Feedback Networks From Ultrasensitive Modules — PhD Thesis, UC Riverside PDF
2016
  • Molecular titration promotes oscillations and bistability in minimal network models with monomeric regulators — ACS Synthetic Biology DOI